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https://github.com/MillironX/nf-core_modules.git
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35 lines
1.1 KiB
YAML
35 lines
1.1 KiB
YAML
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name: "msisensor2_scan"
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description: msisensor2 detection of MSI regions.
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keywords:
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- msi
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tools:
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- "msisensor2":
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description: "MSIsensor2 is a novel algorithm based machine learning, featuring a large upgrade in the microsatellite instability (MSI) detection for tumor only sequencing data, including Cell-Free DNA (cfDNA), Formalin-Fixed Paraffin-Embedded(FFPE) and other sample types. The original MSIsensor is specially designed for tumor/normal paired sequencing data."
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homepage: "https://github.com/niu-lab/msisensor2"
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documentation: "https://github.com/niu-lab/msisensor2/blob/master/README.md"
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tool_dev_url: "https://github.com/niu-lab/msisensor2"
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doi: ""
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licence: "GPL-3.0"
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input:
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- fasta:
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type: file
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description: Path to reference genome.
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pattern: "*.fasta"
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- output:
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type: val
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description: Name of output MSI scan to write.
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- output:
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type: file
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description: Output scan of MSI regions in FASTA file.
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pattern: "*"
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authors:
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- "@adamrtalbot"
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