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23 lines
572 B
Text
23 lines
572 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ATLAS_RECAL } from '../../../../modules/atlas/recal/main.nf'
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workflow test_atlas_recal {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true),
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[],
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[]
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]
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alleles = []
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invariant_sites = []
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ATLAS_RECAL ( input, alleles, invariant_sites )
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}
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