mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 14:13:09 +00:00
10 lines
308 B
Text
10 lines
308 B
Text
|
process {
|
||
|
|
|
||
|
|
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
|
||
|
|
|
||
|
|
withName: 'GATK4_LEFTALIGNANDTRIMVARIANTS' {
|
||
|
|
ext.args = "--split-multi-allelics --dont-trim-alleles --keep-original-ac"
|
||
|
|
ext.prefix = { "${meta.id}.normalised" }
|
||
|
|
}
|
||
|
|
}
|