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11 lines
510 B
YAML
11 lines
510 B
YAML
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- name: mykrobe predict test_mykrobe_predict
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command: nextflow run ./tests/modules/mykrobe/predict -entry test_mykrobe_predict -c ./tests/config/nextflow.config -c ./tests/modules/mykrobe/predict/nextflow.config
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tags:
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- mykrobe/predict
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- mykrobe
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files:
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- path: output/mykrobe/test.csv
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contains: ["susceptibility", "genotype_model", "variants", "test.paired_end.bam"]
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- path: output/mykrobe/test.json
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contains: ["susceptibility", "kmer_count", "files", "test.paired_end.bam"]
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