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38 lines
1.3 KiB
YAML
38 lines
1.3 KiB
YAML
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name: rapidnj
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description: Produces a Newick format phylogeny from a multiple sequence alignment using a Neighbour-Joining algorithm. Capable of bacterial genome size alignments.
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keywords:
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- phylogeny
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- newick
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- neighbour-joining
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tools:
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- rapidnj:
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description: RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.
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homepage: https://birc.au.dk/software/rapidnj
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documentation: https://birc.au.dk/software/rapidnj
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tool_dev_url: https://github.com/somme89/rapidNJ
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doi: "doi:10.1007/978-3-540-87361-7_10"
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licence: ['GPL v2']
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input:
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- alignment:
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type: file
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description: A FASTA format multiple sequence alignment file
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pattern: "*.{fasta,fas,fa,mfa}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- phylogeny:
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type: file
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description: A phylogeny in Newick format
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pattern: "*.{tre}"
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- stockholm_alignment:
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type: file
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description: An alignment in Stockholm format
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pattern: "*.{sth}"
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authors:
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- "@aunderwo"
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- "@avantonder"
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