nf-core_modules/tests/software/nanoplot/test.yml


- name: nanoplot_summary
  command: nextflow run ./tests/software/nanoplot -entry test_nanoplot_summary -c tests/config/nextflow.config
  tags:
    - nanoplot
  files:
    - path: ./output/nanoplot/NanoPlot-report.html
      contains:
        - "report"
- name: nanoplot_fastq
  command: nextflow run ./tests/software/nanoplot -entry test_nanoplot_fastq -c tests/config/nextflow.config
  tags:
    - nanoplot
  files:
    - path: ./output/nanoplot/NanoPlot-report.html
      contains:
        - "report"
Nanoplot and sequencing_summary.txt for Nanopore test data (#364) * add nanoplot * add Nanopore 100 read subset bam and fastq * add nanoplot module and sequencing_summary.txt * Update pytest_software.yml * Update main.nf * test directory path * testing one output file * Update main.nf * fix typo * remove path to test outputs (it worked locally) * use test_data.config in test * add meta.yml * allowing either summary.txt or fastq.gz inputs * fix linting and test.yml * test whether github check can catch the output * add summary.txt test output paths * check Nanoplot-report.html output 2021-04-09 07:31:38 +00:00
			`- name: nanoplot_summary`
			`command: nextflow run ./tests/software/nanoplot -entry test_nanoplot_summary -c tests/config/nextflow.config`
			`tags:`
			`- nanoplot`
			`files:`
			`- path: ./output/nanoplot/NanoPlot-report.html`
			`contains:`
			`- "report"`
			`- name: nanoplot_fastq`
			`command: nextflow run ./tests/software/nanoplot -entry test_nanoplot_fastq -c tests/config/nextflow.config`
			`tags:`
			`- nanoplot`
			`files:`
			`- path: ./output/nanoplot/NanoPlot-report.html`
			`contains:`
			`- "report"`