nf-core_modules/software/pangolin/meta.yml

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name: pangolin
description: Phylogenetic Assignment of Named Global Outbreak LINeages
keywords:
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- covid
- pangolin
- lineage
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tools:
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- star:
description: |
Phylogenetic Assignment of Named Global Outbreak LINeages
homepage: https://github.com/cov-lineages/pangolin#pangolearn-description
manual: https://github.com/cov-lineages/pangolin#pangolearn-description
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input:
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- meta:
type: map
description: |
Groovy Map containing sample information
- fasta:
type: file
description: |
The genome assembly to be evaluated
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output:
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- report:
type: file
description: Pangolin lineage report
pattern: "*.{csv}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
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authors:
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- "@kevinmenden"
- "@drpatelh"