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18 lines
1 KiB
Markdown
18 lines
1 KiB
Markdown
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# Updating the docker container and making a new module release
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bcl2fastq is a commercial tool from Illumina. The container provided for the bcl2fastq nf-core module is not provided nor supported by Illumina. Updating the bcl2fastq versions in the container and pushing the update to Dockerhub needs to be done manually.
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1. Navigate to the appropriate download page. - [bcl2fastq](https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software/downloads.html): download the rpm of the desired bcl2fastq version with `curl` or `wget`.
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2. Unpack the RPM package using `rpm2cpio bcl2fastq2-*.rpm | cpio -i --make-directories`. Place the executable located in `<unpack_dir>/usr/bin/bcl2fastq` in the same folder where the Dockerfile lies.
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3. Create and test the container:
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```bash
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docker build . -t nfcore/bcl2fastq:<VERSION>
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```
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4. Access rights are needed to push the container to the Dockerhub nfcore organization, please ask a core team member to do so.
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```bash
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docker push nfcore/bcl2fastq:<VERSION>
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```
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