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22 lines
467 B
Text
22 lines
467 B
Text
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process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: SAMTOOLS_COLLATE {
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ext.prefix = { "${meta.id}.collate" }
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}
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withName: SAMTOOLS_FIXMATE {
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ext.prefix = { "${meta.id}.fixmate" }
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}
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withName: SAMTOOLS_SORT {
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ext.prefix = { "${meta.id}.sorted" }
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}
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withName: SAMTOOLS_MARKDUP {
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ext.prefix = { "${meta.id}.markdup" }
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}
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}
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