mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
|
name: ngmaster
|
||
|
|
description: Serotyping Neisseria gonorrhoeae assemblies
|
||
|
|
keywords:
|
||
|
|
- fasta
|
||
|
|
- Neisseria gonorrhoeae
|
||
|
|
- serotype
|
||
|
|
tools:
|
||
|
|
- ngmaster:
|
||
|
|
description: In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)
|
||
|
|
homepage: https://github.com/MDU-PHL/ngmaster/blob/master/README.md
|
||
|
|
documentation: https://github.com/MDU-PHL/ngmaster/blob/master/README.md
|
||
|
|
tool_dev_url: https://github.com/MDU-PHL/ngmaster
|
||
|
|
doi: "10.1099/mgen.0.000076"
|
||
|
|
licence: ['GPL v3 only']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: FASTA assembly file
|
||
|
|
pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- tsv:
|
||
|
|
type: file
|
||
|
|
description: Tab-delimited result file
|
||
|
|
pattern: "*.tsv"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@rpetit3"
|