nf-core_modules/modules/bcftools/isec/meta.yml

50 lines
1.3 KiB
YAML
Raw Normal View History

2021-02-01 08:46:24 +00:00
name: bcftools_isec
description: Apply set operations to VCF files
keywords:
- variant calling
- intersect
- union
- complement
- VCF
2021-02-01 08:46:24 +00:00
tools:
- isec:
description: |
Computes intersections, unions and complements of VCF files.
homepage: http://samtools.github.io/bcftools/bcftools.html
documentation: http://www.htslib.org/doc/bcftools.html
doi: 10.1093/bioinformatics/btp352
licence: ["MIT"]
2021-02-01 08:46:24 +00:00
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcfs:
type: files
description: |
List containing 2 or more vcf files
e.g. [ 'file1.vcf', 'file2.vcf' ]
- tbis:
type: files
description: |
List containing the tbi index files corresponding to the vcfs input files
e.g. [ 'file1.vcf.tbi', 'file2.vcf.tbi' ]
2021-02-01 08:46:24 +00:00
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- results:
type: directory
description: Folder containing the set operations results perform on the vcf files
pattern: "${prefix}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
2021-02-01 08:46:24 +00:00
authors:
- "@joseespinosa"
- "@drpatelh"