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18 lines
582 B
Text
18 lines
582 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MOSDEPTH } from '../../../software/mosdepth/main.nf' addParams( options: [:] )
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workflow test_mosdepth {
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input = [ [ id:'test', single_end:true ],
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[ file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ],
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[ file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam.bai", checkIfExists: true) ] ]
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dummy = [ file("${launchDir}/tests/data/dummy/dummy_file.txt", checkIfExists: true) ]
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window_size = 100
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MOSDEPTH ( input, dummy, window_size )
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}
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