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34 lines
1,008 B
Text
34 lines
1,008 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PRESEQ_LCEXTRAP as PRESEQ_LCEXTRAP_SE } from '../../../software/preseq/lcextrap/main.nf' addParams( options: [ publish_dir:'test_preseq_single_end' ] )
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include { PRESEQ_LCEXTRAP as PRESEQ_LCEXTRAP_PE } from '../../../software/preseq/lcextrap/main.nf' addParams( options: [ publish_dir:'test_preseq_paired_end' ] )
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/*
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* Test with single-end data
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*/
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workflow test_preseq_single_end {
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def input = []
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input = [ [ id:'test', single_end:true ], // meta map
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[ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1106616_5M_subset.bam', checkIfExists: true), ] ]
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PRESEQ_LCEXTRAP_SE ( input )
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}
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/*
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* Test with paired-end data
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*/
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workflow test_preseq_paired_end {
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def input = []
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input = [ [ id:'test', single_end:false ], // meta map
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[ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1106616_5M_subset.bam', checkIfExists: true), ] ]
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PRESEQ_LCEXTRAP_PE ( input )
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}
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