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nf-core_modules/tests/modules/stringtie/merge/test.yml

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Add stringtie merge module (from nanoseq modules) (#475) * add stringtie merge module * add md5sum and path for stringtie.merged.gtf * fix errors * try fixing stringtie check error * add tag * remove unreproducible md5sum * address PR suggestions * hopefully fix linting error
2021-05-03 05:18:51 +00:00
- name: stringtie forward-strand merge
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_forward_merge -c tests/config/nextflow.config
Add stringtie merge module (from nanoseq modules) (#475) * add stringtie merge module * add md5sum and path for stringtie.merged.gtf * fix errors * try fixing stringtie check error * add tag * remove unreproducible md5sum * address PR suggestions * hopefully fix linting error
2021-05-03 05:18:51 +00:00
tags:
- stringtie
- stringtie/merge
files:
- path: ./output/test_stringtie_forward_merge/stringtie.merged.gtf
Add option -p to set the # of cpus on stringtie (#601) * Add option -p to set the # of cpus on stringtie * Bump version 2.1.7 to stringtie modules * Output stringtie/merge version * Fix padding * Apply suggestions from code review * Defining software variable * Fix test, gff can't be md5 check, contains instead Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 13:38:40 +00:00
contains:
- 'stringtie'
- 'merge'
- 'chr22'
Add stringtie merge module (from nanoseq modules) (#475) * add stringtie merge module * add md5sum and path for stringtie.merged.gtf * fix errors * try fixing stringtie check error * add tag * remove unreproducible md5sum * address PR suggestions * hopefully fix linting error
2021-05-03 05:18:51 +00:00
- name: stringtie reverse-strand merge
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_reverse_merge -c tests/config/nextflow.config
Add stringtie merge module (from nanoseq modules) (#475) * add stringtie merge module * add md5sum and path for stringtie.merged.gtf * fix errors * try fixing stringtie check error * add tag * remove unreproducible md5sum * address PR suggestions * hopefully fix linting error
2021-05-03 05:18:51 +00:00
tags:
- stringtie
- stringtie/merge
files:
- path: ./output/test_stringtie_reverse_merge/stringtie.merged.gtf
Add option -p to set the # of cpus on stringtie (#601) * Add option -p to set the # of cpus on stringtie * Bump version 2.1.7 to stringtie modules * Output stringtie/merge version * Fix padding * Apply suggestions from code review * Defining software variable * Fix test, gff can't be md5 check, contains instead Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-07-21 13:38:40 +00:00
contains:
- 'stringtie'
- 'merge'
- 'chr22'
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