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https://github.com/MillironX/nf-core_modules.git
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40 lines
1.7 KiB
YAML
40 lines
1.7 KiB
YAML
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- name: snippy run test_snippy_run
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command: nextflow run tests/modules/snippy/run -entry test_snippy_run -c tests/config/nextflow.config -c tests/modules/snippy/run/nextflow.config
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tags:
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- snippy
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- snippy/run
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files:
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- path: output/snippy/test/test.aligned.fa
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md5sum: 47e3390d4167edf1955d162d37aca5e3
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- path: output/snippy/test/test.bam
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- path: output/snippy/test/test.bam.bai
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- path: output/snippy/test/test.bed
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/snippy/test/test.consensus.fa
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md5sum: 483f4a5dfe60171c86ee9b7e6dff908b
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- path: output/snippy/test/test.consensus.subs.fa
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md5sum: 483f4a5dfe60171c86ee9b7e6dff908b
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- path: output/snippy/test/test.csv
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md5sum: 322f942115e5945c2041a88246166703
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- path: output/snippy/test/test.filt.vcf
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contains: ['fileformat', 'freebayes', 'CHROM']
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- path: output/snippy/test/test.gff
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md5sum: df19e1b84ba6f691d20c72b397c88abf
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- path: output/snippy/test/test.html
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md5sum: 1ccbf0ffcadae1a6b2e11681d24c9938
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- path: output/snippy/test/test.log
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contains: ['snippy', 'consensus', 'subs']
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- path: output/snippy/test/test.raw.vcf
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contains: ['fileformat', 'freebayes', 'CHROM']
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- path: output/snippy/test/test.tab
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md5sum: beb9bde3bce985e53e8feba9ec5b136e
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- path: output/snippy/test/test.txt
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contains: ['DateTime', 'ReadFiles', 'VariantTotal']
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- path: output/snippy/test/test.vcf
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contains: ['fileformat', 'freebayes', 'CHROM']
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- path: output/snippy/test/test.vcf.gz
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- path: output/snippy/test/test.vcf.gz.csi
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md5sum: bed9fa291c220a1ba04eb2d448932ffc
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- path: output/snippy/versions.yml
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md5sum: 518aad56c4dbefb6cbcde5ab38cf7b5d
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