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30 lines
927 B
Text
30 lines
927 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GATK4_SELECTVARIANTS } from '../../../../modules/gatk4/selectvariants/main.nf'
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// Basic parameters with uncompressed VCF input
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workflow test_gatk4_selectvariants_vcf_input {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_idx'], checkIfExists: true)
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]
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GATK4_SELECTVARIANTS ( input)
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}
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// Basic parameters with compressed VCF input
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workflow test_gatk4_selectvariants_gz_input {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf_gz_tbi'], checkIfExists: true)
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]
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GATK4_SELECTVARIANTS ( input )
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}
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