2021-03-24 04:55:49 +00:00
|
|
|
#!/usr/bin/env nextflow
|
|
|
|
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
|
2022-08-16 11:05:25 +00:00
|
|
|
include { UCSC_BEDTOBIGBED } from '../../../../modules/ucsc/bedtobigbed/main.nf'
|
2021-03-24 04:55:49 +00:00
|
|
|
|
2022-08-16 11:05:25 +00:00
|
|
|
workflow test_ucsc_bedtobigbed {
|
2021-03-24 04:55:49 +00:00
|
|
|
input = [ [ id: 'test' ], // meta map
|
2021-04-09 12:47:05 +00:00
|
|
|
[ file(params.test_data['sarscov2']['genome']['test_bed12'], checkIfExists: true ) ]
|
2021-03-24 09:53:41 +00:00
|
|
|
]
|
2021-04-09 12:47:05 +00:00
|
|
|
sizes = file(params.test_data['sarscov2']['genome']['genome_sizes'], checkIfExists: true)
|
2021-03-24 04:55:49 +00:00
|
|
|
|
2022-08-16 11:05:25 +00:00
|
|
|
UCSC_BEDTOBIGBED ( input, sizes )
|
2021-03-24 04:55:49 +00:00
|
|
|
}
|