nf-core_modules/tests/modules/allelecounter/test.yml

- name: allelecounter test_allelecounter_bam
  command: nextflow run tests/modules/allelecounter -entry test_allelecounter_bam -c tests/config/nextflow.config
  tags:
    - allelecounter
  files:
    - path: output/allelecounter/test.alleleCount
      md5sum: 2bbe9d7331b78bdac30fe30dbc5fdaf3

- name: allelecounter test_allelecounter_cram
  command: nextflow run tests/modules/allelecounter -entry test_allelecounter_cram -c tests/config/nextflow.config
  tags:
    - allelecounter
  files:
    - path: output/allelecounter/test.alleleCount
      md5sum: 2f83352a185168c7c98e9e42550b2856
Add cram support to Allelecounter module (#1013) * Add CRAM support to allelecounter * Update meta.yml * Rename bam,bai to input,input_index * Apply suggestions from code review * Fix reference to renamed variable Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> 2021-11-02 16:00:25 +00:00			`- name: allelecounter test_allelecounter_bam`
			`command: nextflow run tests/modules/allelecounter -entry test_allelecounter_bam -c tests/config/nextflow.config`
Add alleleCounter module (#313) * Add allelecount module * Add bed file input * Added bai file * Changed conda version * Update main.nf * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Add allelecount module * Add bed file input * Added bai file * Changed conda version * Update main.nf * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Update pytest_software.yml * Remove newline * Fix pytest_software.yml * Update pytest_software.yml Co-authored-by: Gregor Sturm <mail@gregor-sturm.de> 2021-03-23 13:37:53 +00:00			`tags:`
			`- allelecounter`
			`files:`
			`- path: output/allelecounter/test.alleleCount`
			`md5sum: 2bbe9d7331b78bdac30fe30dbc5fdaf3`
Add cram support to Allelecounter module (#1013) * Add CRAM support to allelecounter * Update meta.yml * Rename bam,bai to input,input_index * Apply suggestions from code review * Fix reference to renamed variable Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> 2021-11-02 16:00:25 +00:00
			`- name: allelecounter test_allelecounter_cram`
			`command: nextflow run tests/modules/allelecounter -entry test_allelecounter_cram -c tests/config/nextflow.config`
			`tags:`
			`- allelecounter`
			`files:`
			`- path: output/allelecounter/test.alleleCount`
			`md5sum: 2f83352a185168c7c98e9e42550b2856`