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nf-core_modules/tests/modules/artic/minion/test.yml

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Add artic minion (#486) * Add artic minion module * Add fast5 to test data configuration * Add test for artic minion
2021-05-07 15:37:35 +00:00
- name: artic minion
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run tests/modules/artic/minion -entry test_artic_minion -c tests/config/nextflow.config
Add artic minion (#486) * Add artic minion module * Add fast5 to test data configuration * Add test for artic minion
2021-05-07 15:37:35 +00:00
tags:
- artic
- artic/minion
files:
- path: output/artic/test.1.vcf
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- path: output/artic/test.2.vcf
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- path: output/artic/test.alignreport.er
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- path: output/artic/test.alignreport.txt
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- path: output/artic/test.consensus.fasta
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- path: output/artic/test.coverage_mask.txt
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- path: output/artic/test.coverage_mask.txt.1.depths
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- path: output/artic/test.coverage_mask.txt.2.depths
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- path: output/artic/test.fail.vcf
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- path: output/artic/test.fastq.gz.index
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- path: output/artic/test.merged.vcf
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- path: output/artic/test.minion.log.txt
contains:
- 'artic_vcf_merge'
- path: output/artic/test.muscle.in.fasta
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- path: output/artic/test.muscle.out.fasta
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- path: output/artic/test.primers.vcf
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- path: output/artic/test.primersitereport.txt
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- path: output/untar/fast5/100read_fast5/1bd0dad7-1600-44a2-90b8-d5cd7b7caa6d.fast5
md5sum: 863226172b856834a779eb2013c3a765
- path: output/untar/fast5/100read_fast5/1d568051-bdd6-4204-ac34-97b5a3f7375c.fast5
md5sum: 7d4cdf29110898e5f6a3288a0a2b9342
- path: output/untar/fast5/100read_fast5/1d650a9e-4e67-456a-9abe-bd34b238abe4.fast5
md5sum: 3fac1d13ed49703e33e92b8aaab3dac6
- path: output/untar/fast5/100read_fast5/1d86c2b3-c2c6-43a1-97ed-8c1f0cbf6476.fast5
md5sum: 2eed32c760d94aac2dce49c2364f6cd9
- path: output/untar/fast5/100read_fast5/20586d1a-2cd0-45aa-abc2-04ac66d8ea46.fast5
md5sum: d89ef1d32a52fc5d45a17d7682e4de22
- path: output/untar/fast5/100read_fast5/206626c5-ccf2-4927-9987-164f627bdede.fast5
md5sum: 045d9fdb48f0b58456c7012b735c8101
- path: output/untar/fast5/100read_fast5/2109d790-67ec-4fd1-8931-6c7e61908ff3.fast5
md5sum: 623d2e3213f0423e33b7993d803e4ae5
- path: output/untar/fast5/100read_fast5/2166cca5-c0ab-49eb-aec1-fec09bdfbd83.fast5
md5sum: 54ac4ec12232104381d2dcd619c9b4be
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