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37 lines
1.2 KiB
Text
37 lines
1.2 KiB
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FILTLONG } from '../../../modules/filtlong/main.nf' addParams( options: [:] )
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workflow test_filtlong {
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input = [ [ id:'test', single_end:false ], // meta map
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[],
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[ file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
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]
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FILTLONG ( input )
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}
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workflow test_filtlong_illumina_se {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ],
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[ file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
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]
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FILTLONG ( input )
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}
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workflow test_filtlong_illumina_pe {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ],
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[ file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
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]
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FILTLONG ( input )
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}
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