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18 lines
526 B
Text
18 lines
526 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GUNC_RUN } from '../../../../modules/gunc/run/main.nf' addParams( options: [:] )
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include { GUNC_DOWNLOADDB } from '../../../../modules/gunc/downloaddb/main.nf' addParams( options: [:] )
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workflow test_gunc_run {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['contigs_fasta'], checkIfExists: true) ]
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GUNC_DOWNLOADDB('progenomes')
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GUNC_RUN ( input, GUNC_DOWNLOADDB.out.db )
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}
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