nf-core_modules/tests/modules/iqtree/test.yml

- name: iqtree test workflow
  command: nextflow run ./tests/modules/iqtree -entry test_iqtree -c tests/config/nextflow.config
  tags:
    - iqtree
  files:
    - path: output/iqtree/informative_sites.fas.treefile
      contains:
        - '(sample1:0.002'
        - '(sample2:0.005'
        - 'sample3:0.0005'
        - 'sample4:0.001'
Module new version reporting fixes (#753) * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Fix IQ tree * Fix picard markdup and merge sam * Fix plink/vcf version * Fix plink version output * Fix prokka version command * Fix pydamage * Try fixing markduplicates * Fix snpEff * Fix vcftools version * Fix pydamage and filtersamreads test run * Fix MarkDuplicates tests * Add missing unsorted checks * Remove MD5 sym due to stochasicity in BAM file 2021-09-28 09:51:19 +00:00			`- name: iqtree test workflow`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/iqtree -entry test_iqtree -c tests/config/nextflow.config`
add new iqtree module (#427) * add new iqtree module * Resolve suggests after PR review * add newline to functions 2021-04-12 08:45:56 +00:00			`tags:`
			`- iqtree`
			`files:`
			`- path: output/iqtree/informative_sites.fas.treefile`
			`contains:`
			`- '(sample1:0.002'`
			`- '(sample2:0.005'`
			`- 'sample3:0.0005'`
			`- 'sample4:0.001'`