nf-core_modules/tests/modules/last/mafconvert/test.yml

- name: last mafconvert test_last_mafconvert
  command: nextflow run tests/modules/last/mafconvert -entry test_last_mafconvert -c tests/config/nextflow.config
  tags:
    - last/mafconvert
    - last
  files:
    - path: output/last/contigs.genome.psl.gz
      md5sum: 807889fbc4129884ae74c4ecf8804dde
New last/mafconvert module to convert MAF alignments. (#527) * New last/mafconvert module to convert MAF alignments. The `maf-convert` tool distributed with [LAST](https://gitlab.com/mcfrith/last) reads alignmnts in [MAF](https://genome-asia.ucsc.edu/FAQ/FAQformat.html#format5) format and converts them in another format (axt, blast, blasttab, chain, gff, html, psl, sam, tab). This new module is part of the work described in Issue #464. During this development, we fix the versiob of LAST to 1219 to ensure consistency. We will upgrade it later. * Delete white space. * Update the function.nf file to the dev version. 2021-06-09 06:38:57 +00:00			`- name: last mafconvert test_last_mafconvert`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/last/mafconvert -entry test_last_mafconvert -c tests/config/nextflow.config`
New last/mafconvert module to convert MAF alignments. (#527) * New last/mafconvert module to convert MAF alignments. The `maf-convert` tool distributed with [LAST](https://gitlab.com/mcfrith/last) reads alignmnts in [MAF](https://genome-asia.ucsc.edu/FAQ/FAQformat.html#format5) format and converts them in another format (axt, blast, blasttab, chain, gff, html, psl, sam, tab). This new module is part of the work described in Issue #464. During this development, we fix the versiob of LAST to 1219 to ensure consistency. We will upgrade it later. * Delete white space. * Update the function.nf file to the dev version. 2021-06-09 06:38:57 +00:00			`tags:`
			`- last/mafconvert`
			`- last`
			`files:`
			`- path: output/last/contigs.genome.psl.gz`
			`md5sum: 807889fbc4129884ae74c4ecf8804dde`