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nf-core_modules/tests/modules/megahit/test.yml

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Add MEGAHIT (#810) * Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>
2021-10-12 15:06:06 +00:00
- name: megahit
command: nextflow run ./tests/modules/megahit -entry test_megahit -c tests/config/nextflow.config -process.cpus 1
tags:
- megahit
files:
- path: output/megahit/megahit_out/test.contigs.fa.gz
md5sum: 8ed114f22130e16df3532d3f6b03e116
- path: output/megahit/megahit_out/intermediate_contigs/k21.addi.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k21.contigs.fa.gz
md5sum: 4221d45f238045bbdb1eea04e4ce4261
- path: output/megahit/megahit_out/intermediate_contigs/k21.final.contigs.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k21.local.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k29.addi.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k29.contigs.fa.gz
md5sum: c72aeb242788542af0260098b4d61204
- path: output/megahit/megahit_out/intermediate_contigs/k29.final.contigs.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k29.local.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k39.addi.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k39.contigs.fa.gz
md5sum: aa188f4c92e69c1a4b396e8f2991236f
- path: output/megahit/megahit_out/intermediate_contigs/k39.final.contigs.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k39.local.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- name: megahit_single
command: nextflow run ./tests/modules/megahit -entry test_megahit_single -c tests/config/nextflow.config -process.cpus 1
tags:
- megahit
files:
- path: output/megahit/megahit_out/test.contigs.fa.gz
md5sum: f50352838b778cc67824f631197a8346
- path: output/megahit/megahit_out/intermediate_contigs/k21.addi.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k21.contigs.fa.gz
md5sum: 61554dc60ba8e95d9c1d9dca8d465bef
- path: output/megahit/megahit_out/intermediate_contigs/k21.final.contigs.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k21.local.fa.gz
md5sum: b916fc620fdf0d23ef33485352c168b3
- path: output/megahit/megahit_out/intermediate_contigs/k29.addi.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k29.contigs.fa.gz
md5sum: d916bc564854aa0fabaa5234035aa47b
- path: output/megahit/megahit_out/intermediate_contigs/k29.final.contigs.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k29.local.fa.gz
md5sum: cccf44441e65913b02fb64eb0835dcc1
- path: output/megahit/megahit_out/intermediate_contigs/k39.addi.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k39.contigs.fa.gz
md5sum: 4416a9e846ccbeb06b880ac2fdc02925
- path: output/megahit/megahit_out/intermediate_contigs/k39.final.contigs.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k39.local.fa.gz
md5sum: 590d0a08285226d24f7f984f7b3b4f65
- path: output/megahit/megahit_out/intermediate_contigs/k59.addi.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k59.contigs.fa.gz
md5sum: 51ef726b87a53b0cbdde762d7973a8a7
- path: output/megahit/megahit_out/intermediate_contigs/k59.final.contigs.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
- path: output/megahit/megahit_out/intermediate_contigs/k59.local.fa.gz
md5sum: 7029066c27ac6f5ef18d660d5741979a
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