nf-core_modules/tests/modules/pairtools/dedup/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { PAIRTOOLS_DEDUP } from '../../../../modules/pairtools/dedup/main.nf' addParams( options: ['suffix':'.dedup'] )

workflow test_pairtools_dedup {

    input = [ [ id:'test', single_end:false ], // meta map
                file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.4dedup.pairsam", checkIfExists: true) ]

    PAIRTOOLS_DEDUP ( input )
}
Pairtools dedup (#519) * add software/pairtools * create a branch for pairtools/dedup * remove dedup from the filename. 2021-05-27 16:51:27 +00:00			`#!/usr/bin/env nextflow`

			`nextflow.enable.dsl = 2`

Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`include { PAIRTOOLS_DEDUP } from '../../../../modules/pairtools/dedup/main.nf' addParams( options: ['suffix':'.dedup'] )`
Pairtools dedup (#519) * add software/pairtools * create a branch for pairtools/dedup * remove dedup from the filename. 2021-05-27 16:51:27 +00:00
			`workflow test_pairtools_dedup {`

			`input = [ [ id:'test', single_end:false ], // meta map`
			`file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.4dedup.pairsam", checkIfExists: true) ]`

			`PAIRTOOLS_DEDUP ( input )`
			`}`