nf-core_modules/tests/modules/pairtools/select/main.nf

#!/usr/bin/env nextflow

nextflow.enable.dsl = 2

include { PAIRTOOLS_SELECT } from '../../../../modules/pairtools/select/main.nf' addParams( options: [args:"(pair_type == 'RU') or (pair_type == 'UR') or (pair_type == 'UU')"] )

workflow test_pairtools_select {

    input = [ [ id:'test', single_end:false ], // meta map
              file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.pairsam", checkIfExists: true) ]

    PAIRTOOLS_SELECT ( input )
}