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nf-core_modules/tests/modules/phyloflash/test.yml

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Add phyloflash module (#786) * initial stubs [ci skip] * remove comments and add main command [ci skip] * design iteration [ci skip] * add new standard functions.nf [ci skip] * update the version string [ci skip] * accomodate the db stubs and single/double ends [ci skip] * add FIXME for missing info [ci skip] * Accomodate the results folder [ci skip] * Update main.nf * Apply suggestions from code review * Update main.nf * Apply suggestions from code review * Add version file to stubs [ci skip] * Tweak the output dir pattern [ci skip] * Update modules/phyloflash/main.nf * Update modules/phyloflash/main.nf * Update modules/phyloflash/main.nf Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
2021-11-21 19:43:58 +00:00
- name: phyloflash single-end
command: nextflow run ./tests/modules/phyloflash -entry test_phyloflash_single_end -c tests/config/nextflow.config -stub-run
tags:
- phyloflash
files:
- path: output/phyloflash/test/test.SSU.collection.fasta
md5sum: d41d8cd98f00b204e9800998ecf8427e
- name: phyloflash paired-end
command: nextflow run ./tests/modules/phyloflash -entry test_phyloflash_paired_end -c tests/config/nextflow.config -stub-run
tags:
- phyloflash
files:
- path: output/phyloflash/test/test.SSU.collection.fasta
md5sum: d41d8cd98f00b204e9800998ecf8427e
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