nf-core_modules/tests/modules/qualimap/bamqc/main.nf

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { QUALIMAP_BAMQC } from '../../../../modules/qualimap/bamqc/main.nf' addParams( options: [:] )
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workflow test_qualimap_bamqc {
input = [ [ id:'test', single_end:false ], // meta map
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ]
]
gff = file("dummy_file.txt")
use_gff = false
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QUALIMAP_BAMQC ( input, gff, use_gff )
}