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14 lines
426 B
Text
14 lines
426 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SAMBLASTER } from '../../../modules/samblaster/main.nf' addParams( options: [args: "-M --addMateTags", suffix:'.processed'] )
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workflow test_samblaster {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_umi_unsorted_bam'], checkIfExists: true) ]
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SAMBLASTER ( input )
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}
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