nf-core_modules/tests/modules/strelka/somatic/test.yml

- name: strelka somatic test_strelka_somatic
  command: nextflow run tests/modules/strelka/somatic -entry test_strelka_somatic -c tests/config/nextflow.config
  tags:
    - strelka
    - strelka/somatic
  files:
    - path: output/strelka/test.somatic_indels.vcf.gz
    - path: output/strelka/test.somatic_indels.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/strelka/test.somatic_snvs.vcf.gz
    - path: output/strelka/test.somatic_snvs.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905

- name: strelka somatic test_strelka__best_practices_somatic
  command: nextflow run tests/modules/strelka/somatic -entry test_strelka__best_practices_somatic -c tests/config/nextflow.config
  tags:
    - strelka
    - strelka/somatic
  files:
    - path: output/strelka/test.somatic_indels.vcf.gz
    - path: output/strelka/test.somatic_indels.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
    - path: output/strelka/test.somatic_snvs.vcf.gz
    - path: output/strelka/test.somatic_snvs.vcf.gz.tbi
      md5sum: 4cb176febbc8c26d717a6c6e67b9c905
Add strelka/somatic module (#866) * Add strelka/somatic module * Fill out meta.yml properly 2021-10-18 21:34:23 +00:00			`- name: strelka somatic test_strelka_somatic`
			`command: nextflow run tests/modules/strelka/somatic -entry test_strelka_somatic -c tests/config/nextflow.config`
			`tags:`
			`- strelka`
			`- strelka/somatic`
			`files:`
			`- path: output/strelka/test.somatic_indels.vcf.gz`
			`- path: output/strelka/test.somatic_indels.vcf.gz.tbi`
			`md5sum: 4cb176febbc8c26d717a6c6e67b9c905`
			`- path: output/strelka/test.somatic_snvs.vcf.gz`
			`- path: output/strelka/test.somatic_snvs.vcf.gz.tbi`
			`md5sum: 4cb176febbc8c26d717a6c6e67b9c905`
Update strelka, by enabling BP if Manta candidates are present (#923) * add BP to strelka/somatic * merge conflicts * update strelka modules for BP * update strelka modules for BP * apply suggestions from code review 2021-10-27 15:49:54 +00:00
			`- name: strelka somatic test_strelka__best_practices_somatic`
			`command: nextflow run tests/modules/strelka/somatic -entry test_strelka__best_practices_somatic -c tests/config/nextflow.config`
			`tags:`
			`- strelka`
			`- strelka/somatic`
			`files:`
			`- path: output/strelka/test.somatic_indels.vcf.gz`
			`- path: output/strelka/test.somatic_indels.vcf.gz.tbi`
			`md5sum: 4cb176febbc8c26d717a6c6e67b9c905`
			`- path: output/strelka/test.somatic_snvs.vcf.gz`
			`- path: output/strelka/test.somatic_snvs.vcf.gz.tbi`
			`md5sum: 4cb176febbc8c26d717a6c6e67b9c905`