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22 lines
911 B
YAML
22 lines
911 B
YAML
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- name: tbprofiler profile illumina
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command: nextflow run ./tests/modules/tbprofiler/profile -entry test_tbprofiler_profile_illumina -c tests/config/nextflow.config
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tags:
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- tbprofiler
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- tbprofiler/profile
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files:
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- path: output/tbprofiler/bam/test.bam
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- path: output/tbprofiler/results/test.results.json
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contains: ['genome_positions', 'locus_tag', 'tbprofiler_version']
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- path: output/tbprofiler/vcf/test.targets.csq.vcf.gz
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- name: tbprofiler profile nanopore
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command: nextflow run ./tests/modules/tbprofiler/profile -entry test_tbprofiler_profile_nanopore -c tests/config/nextflow.config
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tags:
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- tbprofiler
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- tbprofiler/profile
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files:
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- path: output/tbprofiler/bam/test.bam
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- path: output/tbprofiler/results/test.results.json
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contains: ['genome_positions', 'locus_tag', 'tbprofiler_version']
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- path: output/tbprofiler/vcf/test.targets.csq.vcf.gz
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