mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
|
name: raven
|
||
|
|
description: De novo genome assembler for long uncorrected reads.
|
||
|
|
keywords:
|
||
|
|
- de novo
|
||
|
|
- assembly
|
||
|
|
- genome
|
||
|
|
- genome assembler
|
||
|
|
- long uncorrected reads
|
||
|
|
tools:
|
||
|
|
- raven:
|
||
|
|
description: Raven is a de novo genome assembler for long uncorrected reads.
|
||
|
|
homepage: https://github.com/lbcb-sci/raven
|
||
|
|
documentation: https://github.com/lbcb-sci/raven#usage
|
||
|
|
tool_dev_url: https://github.com/lbcb-sci/raven
|
||
|
|
doi: doi.org/10.1038/s43588-021-00073-4
|
||
|
|
licence: ['MIT']
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', suffix:'bacteria' ]
|
||
|
|
- reads:
|
||
|
|
type: file
|
||
|
|
description: Input file in FASTA/FASTQ format.
|
||
|
|
pattern: "*.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}"
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', suffix:'bacteria' ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Assembled FASTA file
|
||
|
|
pattern: "*.fasta.gz"
|
||
|
|
- gfa:
|
||
|
|
type: file
|
||
|
|
description: Repeat graph
|
||
|
|
pattern: "*.gfa.gz"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@fmalmeida"
|