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45 lines
1.2 KiB
YAML
45 lines
1.2 KiB
YAML
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name: "seqkit_stats"
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description: simple statistics of FASTA/Q files
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keywords:
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- seqkit
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- stats
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tools:
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- "seqkit":
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description: Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
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homepage: https://bioinf.shenwei.me/seqkit/usage/
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documentation: https://bioinf.shenwei.me/seqkit/usage/
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tool_dev_url: https://github.com/shenwei356/seqkit/
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doi: "10.1371/journal.pone.0163962"
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: >
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: >
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Either FASTA or FASTQ files.
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pattern: "*.{fa,fna,faa,fasta,fq,fastq}[.gz]"
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output:
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- meta:
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type: map
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description: >
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- stats:
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type: file
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description: >
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Tab-separated output file with basic sequence statistics.
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pattern: "*.tsv"
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authors:
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- "@Midnighter"
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