mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
43 lines
1.1 KiB
YAML
43 lines
1.1 KiB
YAML
|
name: msisensor_scan
|
||
|
|
|
||
|
|
description: Scan a reference genome to get microsatellite & homopolymer information
|
||
|
|
keywords:
|
||
|
|
- homoploymer,microsatellite
|
||
|
|
tools:
|
||
|
|
- msisensor:
|
||
|
|
description: MSIsensor is a C++ program to detect replication slippage variants at microsatellite regions, and differentiate them as somatic or germline.
|
||
|
|
homepage: https://github.com/ding-lab/msisensor
|
||
|
|
documentation: None
|
||
|
|
tool_dev_url: None
|
||
|
|
doi: "10.1093/bioinformatics/btt755"
|
||
|
|
licence: ['MIT']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: FASTA file
|
||
|
|
pattern: "*.{fa,fasta}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- txt:
|
||
|
|
type: file
|
||
|
|
description: MSIsensor scan output file of homopolymers & minisatellites
|
||
|
|
pattern: "*.msisensor_scan.txt"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@kevbrick"
|