nf-core_modules/tests/modules/seqtk/mergepe/test.yml

- name: seqtk mergepe test_seqtk_mergepe_single_end
  command: nextflow run tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_single_end -c tests/config/nextflow.config
  tags:
    - seqtk/mergepe
    - seqtk
  files:
    - path: output/seqtk/test.processed.fastq.gz
      md5sum: e325ef7deb4023447a1f074e285761af

- name: seqtk mergepe test_seqtk_mergepe_paired_end
  command: nextflow run tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_paired_end -c tests/config/nextflow.config
  tags:
    - seqtk/mergepe
    - seqtk
  files:
    - path: output/seqtk/test.processed.fastq.gz
      md5sum: 3f094ef62d9bfe06aa25174a06bc7d04
New module seqtk/mergepe (#951) * First step into creating a seqtk/mergepe module to interleave fastQ input * First rewrite of main.nf to make the module perform the desired (interleave/merge of pe reads) task * Modifications to test the new seqtk/mergepe module. * Improving the seqtk/mergepe module to output single end reads as well, and making sure tests work * Modified so that gzip uses -n and that single read entries are symlinked with ln -s instead of copied, therefore updated test.yml as well. * Fix trailing whitespaces Co-authored-by: Daniel Lundin <daniel.lundin@lnu.se> 2021-10-28 14:53:33 +00:00			`- name: seqtk mergepe test_seqtk_mergepe_single_end`
			`command: nextflow run tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_single_end -c tests/config/nextflow.config`
			`tags:`
			`- seqtk/mergepe`
			`- seqtk`
			`files:`
			`- path: output/seqtk/test.processed.fastq.gz`
			`md5sum: e325ef7deb4023447a1f074e285761af`

			`- name: seqtk mergepe test_seqtk_mergepe_paired_end`
			`command: nextflow run tests/modules/seqtk/mergepe -entry test_seqtk_mergepe_paired_end -c tests/config/nextflow.config`
			`tags:`
			`- seqtk/mergepe`
			`- seqtk`
			`files:`
			`- path: output/seqtk/test.processed.fastq.gz`
			`md5sum: 3f094ef62d9bfe06aa25174a06bc7d04`