nf-core_modules/modules/cnvpytor/view/meta.yml

45 lines
1.2 KiB
YAML
Raw Normal View History

2022-05-03 12:26:46 +00:00
name: cnvpytor_view
description: view function to generate vcfs
keywords:
- cnv calling
tools:
- cnvpytor:
description: calling CNVs using read depth
homepage: https://github.com/abyzovlab/CNVpytor
documentation: https://github.com/abyzovlab/CNVpytor
tool_dev_url: https://github.com/abyzovlab/CNVpytor
doi: "10.1101/2021.01.27.428472v1"
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- pytor:
type: file
description: pytor file containing read depth data
pattern: "*.{pytor}"
- bin_sizes:
type: string
description: list of binsizes separated by space e.g. "1000 10000" and "1000"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- partitions:
type: file
description: pytor file containing partitions of read depth histograms using mean-shift method
pattern: "*.{pytor}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@sima-r"