mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
36 lines
1.1 KiB
YAML
36 lines
1.1 KiB
YAML
|
name: gatk4_samtofastq
|
||
|
|
description: Converts BAM/SAM file to FastQ format
|
||
|
|
keywords:
|
||
|
|
- bed
|
||
|
|
- interval list
|
||
|
|
tools:
|
||
|
|
- gatk4:
|
||
|
|
description: |
|
||
|
|
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
|
||
|
|
with a primary focus on variant discovery and genotyping. Its powerful processing engine
|
||
|
|
and high-performance computing features make it capable of taking on projects of any size.
|
||
|
|
homepage: https://gatk.broadinstitute.org/hc/en-us
|
||
|
|
documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
|
||
|
|
doi: 10.1158/1538-7445.AM2017-3590
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test']
|
||
|
|
- bam:
|
||
|
|
type: file
|
||
|
|
description: Input SAM/BAM file
|
||
|
|
pattern: "*.{bam,sam}"
|
||
|
|
output:
|
||
|
|
- fastq:
|
||
|
|
type: file
|
||
|
|
description: converted fastq file
|
||
|
|
pattern: "*.fastq"
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.version.txt"
|
||
|
|
authors:
|
||
|
|
- "@kevinmenden"
|