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37 lines
902 B
YAML
37 lines
902 B
YAML
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name: star_genomegenerate
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description: Create index for STAR
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keywords:
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- index
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- fasta
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- genome
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- reference
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tools:
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- star:
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description: |
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STAR is a software package for mapping DNA sequences against
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a large reference genome, such as the human genome.
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homepage: https://github.com/alexdobin/STAR
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manual: https://github.com/alexdobin/STAR/blob/master/doc/STARmanual.pdf
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doi: 10.1093/bioinformatics/bts635
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input:
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- fasta:
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type: file
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description: Fasta file of the reference genome
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- gtf:
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type: file
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description: GTF file of the reference genome
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output:
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- index:
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type: directory
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description: Folder containing the star index files
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pattern: "star"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@kevinmenden"
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- "@drpatelh"
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