2021-02-16 18:11:36 +00:00
|
|
|
name: tabix_bgzip
|
|
|
|
description: Compresses files
|
2021-01-30 10:22:25 +00:00
|
|
|
keywords:
|
|
|
|
- compress
|
2021-02-16 18:11:36 +00:00
|
|
|
- bgzip
|
|
|
|
- tabix
|
2021-01-30 10:22:25 +00:00
|
|
|
tools:
|
|
|
|
- bgzip:
|
2021-02-01 08:28:51 +00:00
|
|
|
description: |
|
|
|
|
Bgzip compresses files in a similar manner to, and compatible with, gzip.
|
2021-02-16 18:11:36 +00:00
|
|
|
homepage: https://www.htslib.org/doc/tabix.html
|
2021-02-01 08:28:51 +00:00
|
|
|
documentation: http://www.htslib.org/doc/bgzip.html
|
|
|
|
doi: 10.1093/bioinformatics/btp352
|
2021-01-30 10:22:25 +00:00
|
|
|
input:
|
|
|
|
- meta:
|
2021-02-01 08:28:51 +00:00
|
|
|
type: map
|
|
|
|
description: |
|
|
|
|
Groovy Map containing sample information
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
2021-02-16 18:11:36 +00:00
|
|
|
- file:
|
2021-02-01 08:28:51 +00:00
|
|
|
type: file
|
2021-02-16 18:11:36 +00:00
|
|
|
description: text file
|
2021-01-30 10:22:25 +00:00
|
|
|
output:
|
2021-02-01 08:28:51 +00:00
|
|
|
- meta:
|
|
|
|
type: map
|
|
|
|
description: |
|
|
|
|
Groovy Map containing sample information
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
2021-02-16 18:11:36 +00:00
|
|
|
- file:
|
2021-02-01 08:28:51 +00:00
|
|
|
type: file
|
2021-02-16 18:11:36 +00:00
|
|
|
description: Output compressed file
|
|
|
|
pattern: "*.{gz}"
|
2021-01-30 10:22:25 +00:00
|
|
|
- version:
|
2021-02-01 08:28:51 +00:00
|
|
|
type: file
|
|
|
|
description: File containing software version
|
|
|
|
pattern: "*.{version.txt}"
|
2021-01-30 10:22:25 +00:00
|
|
|
authors:
|
|
|
|
- "@joseespinosa"
|
|
|
|
- "@drpatelh"
|
2021-02-16 18:11:36 +00:00
|
|
|
- "@maxulysse"
|