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17 lines
512 B
Text
17 lines
512 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GSTAMA_COLLAPSE } from '../../../../modules/gstama/collapse/main.nf' addParams( options: [ args:"-x capped -b BAM", suffix:'_tc' ] )
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workflow test_gstama_collapse {
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input = [
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[ id:'test' ], // meta map
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file(params.test_data['homo_sapiens']['pacbio']['aligned'], checkIfExists: true)
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]
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genome = file(params.test_data['homo_sapiens']['genome']['genome2_fasta'], checkIfExists: true)
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GSTAMA_COLLAPSE ( input, genome )
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}
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