nf-core_modules/modules/bamaligncleaner/meta.yml

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name: bamaligncleaner
description: removes unused references from header of sorted BAM/CRAM files.
keywords:
- bam
tools:
- bamaligncleaner:
description: Removes unaligned references in aligned BAM alignment file
homepage: https://github.com/maxibor/bamAlignCleaner
documentation: https://github.com/maxibor/bamAlignCleaner
tool_dev_url: https://github.com/maxibor/bamAlignCleaner
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM/CRAM file
pattern: "*.{bam,cram}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- bam:
type: file
description: Sorted BAM/CRAM file
pattern: "*.{bam,cram}"
authors:
- "@jfy133"