mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
51 lines
1.3 KiB
YAML
51 lines
1.3 KiB
YAML
|
name: expansionhunter
|
||
|
|
description: write your description here
|
||
|
|
keywords:
|
||
|
|
- STR
|
||
|
|
- repeat_expansions
|
||
|
|
tools:
|
||
|
|
- expansionhunter:
|
||
|
|
description: A tool for estimating repeat sizes
|
||
|
|
homepage: https://github.com/Illumina/ExpansionHunter
|
||
|
|
documentation: https://github.com/Illumina/ExpansionHunter/blob/master/docs/01_Introduction.md
|
||
|
|
tool_dev_url: None
|
||
|
|
doi: "10.1093/bioinformatics/btz431"
|
||
|
|
licence: ['Apache v2.0']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- bam:
|
||
|
|
type: file
|
||
|
|
description: BAM/CRAM file
|
||
|
|
pattern: "*.{bam,cram}"
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Reference genome
|
||
|
|
pattern: "*.{fa,fasta}"
|
||
|
|
- variant_catalog:
|
||
|
|
type: file
|
||
|
|
description: json file with repeat expansion sites to genotype
|
||
|
|
pattern: "*.{json}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', gender:'female' ]
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- vcf:
|
||
|
|
type: file
|
||
|
|
description: VCF with repeat expansions
|
||
|
|
pattern: "*.{vcf}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@jemten"
|