nf-core_modules/modules/malt/run/meta.yml

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name: malt_run
description: MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
keywords:
- malt
- alignment
- metagenomics
- ancient DNA
- aDNA
- palaeogenomics
- archaeogenomics
- microbiome
tools:
- malt:
description: A tool for mapping metagenomic data
homepage: https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
documentation: https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
tool_dev_url: None
doi: "10.1038/s41559-017-0446-6"
licence: ['GPL v3']
input:
- fastqs:
type: file
description: Input FASTQ files
pattern: "*.{fastq.gz,fq.gz}"
- mode:
type: string
description: Program mode
pattern: 'Unknown|BlastN|BlastP|BlastX|Classifier'
- index:
type: directory
description: Index/database directory from malt-build
pattern: '*/'
output:
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- rma6:
type: file
description: MEGAN6 RMA6 file
pattern: "*.rma6"
- sam:
type: file
description: Alignment files in Tab, Text or MEGAN-compatible SAM format
pattern: "*.{tab,txt,sam}"
- log:
type: file
description: Log of verbose MALT stdout
pattern: "malt-run.log"
authors:
- "@jfy133"