nf-core_modules/modules/minimap2/align/meta.yml

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name: minimap2_align
description: A versatile pairwise aligner for genomic and spliced nucleotide sequences
keywords:
- align
- fasta
- fastq
- genome
- paf
- reference
tools:
- minimap2:
description: |
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
homepage: https://github.com/lh3/minimap2
documentation: https://github.com/lh3/minimap2#uguide
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
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List of input FASTA or FASTQ files of size 1 and 2 for single-end
and paired-end data, respectively.
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- reference:
type: file
description: |
Reference database in FASTA format.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- paf:
type: file
description: Alignment in PAF format
pattern: "*.paf"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@heuermh"