mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
52 lines
1.3 KiB
YAML
52 lines
1.3 KiB
YAML
|
name: pbccs
|
||
|
|
description: Pacbio ccs - Generate Higly Accurate Single-Molecule Consensus Reads
|
||
|
|
keywords:
|
||
|
|
- ccs
|
||
|
|
tools:
|
||
|
|
- pbccs:
|
||
|
|
description: pbccs - Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
|
||
|
|
homepage: https://github.com/PacificBiosciences/pbbioconda
|
||
|
|
documentation: https://ccs.how/
|
||
|
|
tool_dev_url: https://github.com/PacificBiosciences/ccs
|
||
|
|
doi: ""
|
||
|
|
licence: ['BSD-3-clause-Clear']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- bam:
|
||
|
|
type: file
|
||
|
|
description: Raw subreads bam
|
||
|
|
pattern: "*.subreads.bam"
|
||
|
|
- pbi:
|
||
|
|
type: file
|
||
|
|
description: Pacbio BAM Index
|
||
|
|
pattern: "*.pbi"
|
||
|
|
- chunk_num:
|
||
|
|
-type: integer
|
||
|
|
-description: BAM part to process
|
||
|
|
- chunk_on:
|
||
|
|
-type: integer
|
||
|
|
-description: Total number of bam parts to process
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- css:
|
||
|
|
type: file
|
||
|
|
description: Consensus sequences
|
||
|
|
pattern: "*.ccs.bam"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@sguizard"
|