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54 lines
1.3 KiB
YAML
54 lines
1.3 KiB
YAML
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name: plink_vcf
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description: Analyses variant calling files using plink
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keywords:
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- plink
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- vcf
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tools:
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- plink:
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description: |
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Whole genome association analysis toolset, designed to perform a range
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of basic, large-scale analyses in a computationally efficient manner
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homepage: "https://www.cog-genomics.org/plink"
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documentation: None
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tool_dev_url: "https://www.cog-genomics.org/plink/1.9/dev"
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doi: ""
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licence: ['GPL']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file
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description: Variant calling file (vcf)
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pattern: "*.{vcf}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- bed:
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type: file
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description: PLINK binary biallelic genotype table
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pattern: "*.{bed}"
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- bim:
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type: file
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description: PLINK extended MAP file
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pattern: "*.{bim}"
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- fam:
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type: file
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description: PLINK sample information file
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pattern: "*.{fam}"
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authors:
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- "@Mxrcon"
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- "@abhi18av"
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