nf-core_modules/tests/modules/bcftools/mpileup/test.yml

- name: bcftools mpileup test_bcftools_mpileup
  command: nextflow run tests/modules/bcftools/mpileup -entry test_bcftools_mpileup -c tests/config/nextflow.config
  tags:
    - bcftools/mpileup
    - bcftools
  files:
    - path: output/bcftools/test.bcftools_stats.txt
      md5sum: 74863ef525eef8d87e3119146d281bcf
    - path: output/bcftools/test.vcf.gz.tbi
      md5sum: 0772419c5d819b4caa4aebfcad010c6e
    - path: output/bcftools/test.vcf.gz
      md5sum: 9811674bb8da7ff30581319a910f2396
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 18:14:11 +00:00			`- name: bcftools mpileup test_bcftools_mpileup`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/bcftools/mpileup -entry test_bcftools_mpileup -c tests/config/nextflow.config`
Add tests for bcftools-mpileup 2021-02-23 18:05:57 +00:00			`tags:`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- bcftools/mpileup`
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 18:14:11 +00:00			`- bcftools`
Add tests for bcftools-mpileup 2021-02-23 18:05:57 +00:00			`files:`
			`- path: output/bcftools/test.bcftools_stats.txt`
nf-core modules bump-versions for all modules (#630) * Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests 2021-07-28 08:10:44 +00:00			`md5sum: 74863ef525eef8d87e3119146d281bcf`
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 18:14:11 +00:00			`- path: output/bcftools/test.vcf.gz.tbi`
nf-core modules bump-versions for all modules (#630) * Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests 2021-07-28 08:10:44 +00:00			`md5sum: 0772419c5d819b4caa4aebfcad010c6e`
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-03-24 18:14:11 +00:00			`- path: output/bcftools/test.vcf.gz`
nf-core modules bump-versions for all modules (#630) * Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests 2021-07-28 08:10:44 +00:00			`md5sum: 9811674bb8da7ff30581319a910f2396`