nf-core_modules/tests/modules/bismark/align/test.yml

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- name: Run bismark align single-end test workflow
command: nextflow run ./tests/modules/bismark/align -entry test_bismark_align_single_end -c tests/config/nextflow.config
tags:
- bismark
- bismark/align
files:
- path: output/test_single_end/test.methylated_1_bismark_bt2.bam
md5sum: dca4ba9ff705b70446f812e59bdb1a32
- path: output/test_single_end/test.methylated_1_bismark_bt2_SE_report.txt
- name: Run bismark align paired-end test workflow
command: nextflow run ./tests/modules/bismark/align -entry test_bismark_align_paired_end -c tests/config/nextflow.config
tags:
- bismark
- bismark/align
files:
- path: output/test_paired_end/test.methylated_1_bismark_bt2_pe.bam
md5sum: 43943b1f30d056fcbd9ed26061ea0583
- path: output/test_paired_end/test.methylated_1_bismark_bt2_PE_report.txt