nf-core_modules/tests/modules/lofreq/call/test.yml

- name: lofreq call test_lofreq_call
  command: nextflow run tests/modules/lofreq/call -entry test_lofreq_call -c tests/config/nextflow.config
  tags:
    - lofreq
    - lofreq/call
  files:
    - path: output/lofreq/test.vcf.gz
      contains: ['##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">']
Lofreq call (#564) * created templates * updated functions.nf to the one on dev * Created test main * Fasta added and docker, conda, singularity passing * Fixed output version lint 2021-07-06 09:41:00 +00:00			`- name: lofreq call test_lofreq_call`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/lofreq/call -entry test_lofreq_call -c tests/config/nextflow.config`
Lofreq call (#564) * created templates * updated functions.nf to the one on dev * Created test main * Fasta added and docker, conda, singularity passing * Fixed output version lint 2021-07-06 09:41:00 +00:00			`tags:`
			`- lofreq`
			`- lofreq/call`
			`files:`
			`- path: output/lofreq/test.vcf.gz`
fix: lofreq/call `test.yml` md5sum (#587) 2021-07-19 07:53:27 +00:00			`contains: ['##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant).">']`