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22 lines
652 B
Text
22 lines
652 B
Text
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#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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include '../main.nf' params(params)
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// Define input channels
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readPaths = [
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['SRR4238351', '../../../test-datasets/tools/fastqc/input/SRR4238351_subsamp.fastq.gz'],
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['SRR4238355', '../../../test-datasets/tools/fastqc/input/SRR4238355_subsamp.fastq.gz'],
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['SRR4238359', '../../../test-datasets/tools/fastqc/input/SRR4238359_subsamp.fastq.gz'],
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['SRR4238379', '../../../test-datasets/tools/fastqc/input/SRR4238379_subsamp.fastq.gz']
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]
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Channel
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.from(readPaths)
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.map { row -> [ row[0], [ file(row[1]) ] ] }
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.set { ch_read_files }
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// Run the workflow
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workflow {
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cutadapt(ch_read_files)
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}
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